IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn34 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_AllMapped_edited.nwk -s All_Species_m2_three_prime_UTR.nexus --scf 100 --prefix concord_three_prime_UTR_ref -T 2
Seed:    132209 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Mon May  3 12:07:26 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_three_prime_UTR.nexus ... Nexus format detected
Alignment has 26 sequences with 15148 columns, 9973 distinct patterns
14913 parsimony-informative, 0 singleton sites, 235 constant sites
        Gap/Ambiguity  Composition  p-value
   1  ActMar    1.60%    passed     48.31%
   2  AldGig    1.96%    passed     70.10%
   3  ApaSpi    2.86%    passed     81.10%
   4  BatTri   50.92%    passed     39.28%
   5  CarIns    8.27%    passed     14.64%
   6  CheAbi    6.59%    passed     79.98%
   7  CheMyd    0.89%    passed     53.27%
   8  CheSer    4.01%    passed     62.59%
   9  ChrPic    0.43%    passed     64.88%
  10  CuoAmb    2.91%    passed     15.64%
  11  CuoMcc    0.94%    passed      6.84%
  12  DerCor    1.21%    passed     23.55%
  13  DerMaw    2.63%    passed     82.78%
  14  EmyOrb   41.85%    passed     28.32%
  15  EmySub    1.99%    passed     10.72%
  16  GopAga    1.02%    passed     93.18%
  17  MalTer    6.14%    passed     51.37%
  18  MauRee    0.81%    passed     12.91%
  19  MesTub    3.85%    failed      1.11%
  20  PelCas    4.75%    failed      0.13%
  21  PelSin    3.74%    passed     73.17%
  22  PlaMeg    0.73%    passed     61.44%
  23  PodExp   10.32%    failed      0.00%
  24  SteCar    2.88%    passed     33.71%
  25  TerCar    1.87%    passed     68.54%
  26  TraScr    0.85%    passed     43.66%
WARNING: 1 sequences contain more than 50% gaps/ambiguity
****  TOTAL     6.39%  3 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_AllMapped_edited.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.247 sec
Tree with concordance factors written to concord_three_prime_UTR_ref.cf.tree
Annotated tree (best viewed in FigTree) written to concord_three_prime_UTR_ref.cf.tree.nex
Tree with branch IDs written to concord_three_prime_UTR_ref.cf.branch
Concordance factors per branch printed to concord_three_prime_UTR_ref.cf.stat
Date and Time: Mon May  3 12:07:26 2021
